Showing : homo sapiens • reset
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Understand the chromosome name in homo sapiens gene database
homo sapiens chromosome
updated 6.4 years ago by 67k • written 6.4 years ago by • 0
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5
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1.7k
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TxDb.Hsapiens.UCSC.hg19.knownGene - Error: subscript contains out-of-bounds indices for some Entrez codes
bioconductor genomicranges homo sapiens
updated 7.6 years ago by 67k • written 7.6 years ago by • 0
3
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5
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Error selecting Gene Symbol using Entrez ID via Homo.sapiens
homo sapiens
updated 9.6 years ago by ★ 7.2k • written 9.6 years ago by ▴ 50
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Weirdness with the human org.Hs.eg.db annotation database
annotationdbi homo sapiens
updated 10.0 years ago by ★ 7.2k • written 10.0 years ago by ▴ 220
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BSgenome
Homo sapiens BSgenome BSgenome Homo sapiens BSgenome BSgenome
updated 10.3 years ago by 67k • written 10.3 years ago by ▴ 290
2
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8
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2.3k
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Genes annotated to GO:0031281 using org.Hs.eg.db
GO Homo sapiens GO Homo sapiens
updated 10.6 years ago by 67k • written 10.6 years ago by ★ 1.1k
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2
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GO-Pathways using RDAVIDWebService
Pathways Homo sapiens RDAVIDWebService Pathways Homo sapiens RDAVIDWebService
updated 10.7 years ago by ▴ 370 • written 10.7 years ago by ▴ 50
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edgeR dispersion value
Homo sapiens Homo sapiens
updated 11.3 years ago by ▴ 880 • written 11.3 years ago by ★ 13k
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getGEO vs GEOmetadb
Lung Homo sapiens Pseudomonas aeruginosa GEOmetadb Lung Homo sapiens Pseudomonas aeruginosa
11.4 years ago Jack Zhu ▴ 170
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3
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2.6k
views
DEXSeq Issue
Alignment Annotation GO Homo sapiens TranscriptDb PROcess GenomicFeatures DEXSeq Alignment
updated 11.4 years ago by 42k • written 11.4 years ago by ▴ 150
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DEXSeq Problems
Alignment Homo sapiens PROcess Alignment Homo sapiens PROcess
updated 11.4 years ago by ★ 3.8k • written 11.4 years ago by ▴ 150
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views
Bioconductor Digest, Vol 119, Issue 1
Preprocessing Homo sapiens affy oligo RPA Preprocessing Homo sapiens affy oligo RPA
updated 11.8 years ago by ▴ 20 • written 11.8 years ago by ▴ 40
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Cancer Homo sapiens affy Cancer Homo sapiens affy
updated 11.8 years ago by ▴ 20 • written 11.8 years ago by 25k
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Homo sapiens affy Homo sapiens affy
11.8 years ago Guest User ★ 13k
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Fwd: ASSIST on contrast matrix
Network Homo sapiens limma PROcess Network Homo sapiens limma PROcess
12.1 years ago Seyed Ahmad Mousavi ▴ 10
2
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1.2k
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How updated is hom.Hs.inp.db? (to get homologous mapping between mouse and human symbol)?
GO Homo sapiens GO Homo sapiens
updated 12.2 years ago by ★ 7.2k • written 12.2 years ago by ▴ 940
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views
bioMart
Homo sapiens biomaRt Homo sapiens biomaRt
12.7 years ago Bogdan ▴ 670
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1.2k
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custom SNPlocs / BSgenome package
SNP Annotation Organism Homo sapiens BSgenome SNPlocs BSgenome SNP Annotation Organism
updated 12.9 years ago by 16k • written 12.9 years ago by ▴ 100
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illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
13.0 years ago Mark Cowley ▴ 910
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1
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1.3k
views
illuminaHumanv4 mappings
Cancer Homo sapiens Cancer Homo sapiens
updated 13.1 years ago by ★ 1.1k • written 13.1 years ago by ▴ 910
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topTable (fit) annotation
Annotation GO Homo sapiens annotate limma GEOquery Annotation GO Homo sapiens annotate
13.1 years ago Jing Huang ▴ 380
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1
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1.3k
views
working with ROOT and the xps problem
miRNA Microarray Annotation Homo sapiens probe xps miRNA Microarray Annotation probe xps
updated 13.6 years ago by ★ 3.9k • written 13.6 years ago by ★ 1.5k
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Ensembl mart release 57: Useful information
SNP GO Homo sapiens zebrafish SNP GO Homo sapiens zebrafish
14.6 years ago Rhoda Kinsella ▴ 660
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1.2k
views
Is there anyway to map a set of EST id's to genBank accessions?
Annotation Homo sapiens annotate Annotation Homo sapiens annotate
updated 14.7 years ago by ▴ 610 • written 14.7 years ago by ▴ 10
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R: difference between "hsa-miR-xxx" and "hsa-miR-xxx*"
miRNA Homo sapiens biomaRt microRNA miRNA Homo sapiens biomaRt microRNA
15.0 years ago mauede@alice.it ▴ 870
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1.6k
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R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Cancer Homo sapiens biomaRt microRNA Transcription miRNA Cancer
15.1 years ago • updated 15.0 years ago mauede@alice.it ▴ 870
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R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Homo sapiens biomaRt Transcription miRNA Homo sapiens biomaRt
updated 15.1 years ago by ▴ 580 • written 15.1 years ago by ▴ 870
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biomaRt vs biomart.org
Homo sapiens biomaRt Homo sapiens biomaRt
15.1 years ago Tefina Paloma ▴ 220
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1.2k
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error with "retrain" method of gene2pathway package
Pathways GO Organism Homo sapiens hgu133plus2 gene2pathway Pathways GO Organism
updated 15.1 years ago by 67k • written 15.1 years ago by ▴ 340
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941
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Ensembl mart release 55: Useful information
Danio rerio Homo sapiens probe Danio rerio Homo sapiens probe
15.3 years ago Rhoda Kinsella ▴ 660
0
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1.0k
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Can I use such identifier to interrogate BioMart ?
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.3 years ago mauede@alice.it ▴ 870
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I: Help with symbol names mapping between miRecords and BioMart
GO Homo sapiens biomaRt GO Homo sapiens biomaRt
15.3 years ago mauede@alice.it ▴ 870
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0
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821
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one more doubt about the (miRNA, gene-3UTR) pairs from Ensembl and BioMart
miRNA Homo sapiens miRNA Homo sapiens
15.3 years ago mauede@alice.it ▴ 870
0
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6
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1.7k
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 15.3 years ago by ★ 3.4k • written 15.3 years ago by ▴ 870
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1.2k
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
15.3 years ago michael watson IAH-C ★ 3.4k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 870
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1
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3.9k
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how to get the miRNA, identifier from database Ensembl through biomaRt functions ???
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 870
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2
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1.3k
views
R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 870
0
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0
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1.8k
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how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.3 years ago michael watson IAH-C ★ 3.4k
0
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0
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1.3k
views
how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.3 years ago mauede@alice.it ▴ 870
0
votes
2
replies
1.6k
views
how to find the validated pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens miRNA Homo sapiens
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 870
0
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1
reply
2.9k
views
How to find SNP names
SNP Homo sapiens SNPlocs SNP Homo sapiens SNPlocs
updated 15.4 years ago by 16k • written 15.4 years ago by ▴ 90
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2
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1.3k
views
Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing Homo sapiens probe Ringo Preprocessing Homo sapiens probe Ringo
15.4 years ago JEAN-YVES SGRO ▴ 20
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3
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7.0k
views
org.Hs.eg.db -- Entrez ID to Gene Symbol conversion
Cancer Homo sapiens convert Cancer Homo sapiens convert
updated 15.7 years ago by ▴ 10 • written 15.7 years ago by ★ 1.1k
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1.1k
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Annotation package for Agilent human CGH 44B
Annotation CGH Homo sapiens Annotation CGH Homo sapiens
15.7 years ago Daren Tan ▴ 190
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872
views
Re: maPlot and defining controls
Microarray Homo sapiens Microarray Homo sapiens
20.9 years ago Chris Bye ▴ 30
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1
reply
993
views
Problems highlight control spots in MA plots
Microarray Homo sapiens Microarray Homo sapiens
updated 20.9 years ago by ▴ 920 • written 20.9 years ago by ▴ 20
47 results • Page 1 of 1
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Replies
Answer: Error using champ.import by Ricky • 0
I had similar issues. The workaround is to use ChAMP v2.29.1 and also use ChAMPdata 2.31.1. Installation was done using the following on …
Comment: Label specific rows in pheatmap by James W. MacDonald 67k
``` ind <- !row.names(your matrix) %in% <vector of rownames you want> row.names(your matrix)[ind] <- "" ``` This is a basic R manipulatio…
Comment: Label specific rows in pheatmap by Dina ▴ 50
I have been fiddling with the code in the link and havent had any luck. The issue is the 25 genes I want to include are randomly distribute…
Answer: enrichKEGG by James W. MacDonald 67k
Your question is a basic analysis question rather than something specific to a Bioconductor package, so is off-topic for this site. If you …
Answer: Label specific rows in pheatmap by James W. MacDonald 67k
You have found the answer to your question in the post you link to. Just convert the `row.names` of the rows you don't want to include to b…
Votes
Answer: Automatically generate contrasts from a model matrix / formula
Answer: Automatically generate contrasts from a model matrix / formula
Comment: Bioconductor 3.20 Release Schedule
Answer: edgeR 4.2.2 not compiled for Windows
Bioconductor 3.20 Release Schedule
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